Transcript: lnc-CLK1-1:1

Basic information

LNCipedia transcript ID: lnc-CLK1-1:1 
LNCipedia gene ID: lnc-CLK1-1
Ensembl Gene ID: ENSG00000230408
Ensembl Transcript ID: ENST00000447972
RefSeq ID: NR_110275
Location (hg38): chr2:200780495-200812170
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 877 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000447972.3; AC007163.6-001; OTTHUMT00000335879.3; NONHSAT076321; NR_110275; NR_110275.1
Alternative gene names: ENSG00000230408.3; AC007163.6; OTTHUMG00000154546.3; AC007163.1; LOC101927795


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 44.6061 non-coding 
CPAT coding probability 8.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CLK1-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLK1-1:1
4.0 lnc-CLK1-1:1
4.1 lnc-CLK1-1:1
5.0 lnc-CLK1-1:1
5.1 lnc-HSPD1-49:4
5.2 lnc-CLK1-1:1