Transcript: lnc-CLN6-1:1

Basic information

LNCipedia transcript ID: lnc-CLN6-1:1 
LNCipedia gene ID: lnc-CLN6-1
Ensembl Gene ID: ENSG00000260657
Ensembl Transcript ID: ENST00000563057
Location (hg38): chr15:68267792-68277994
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 396 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000563057.1; RP11-315D16.4-001; OTTHUMT00000419862.1; NONHSAT046885
Alternative gene names: ENSG00000260657.1; RP11-315D16.4; OTTHUMG00000172682.1; ENSG00000260657.2; AC107871.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 2.6676 non-coding 
CPAT coding probability 3.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLN6-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLN6-1:1
4.0 lnc-CLN6-1:1
4.1 lnc-CLN6-1:1
5.0 lnc-CLN6-1:1
5.1 lnc-CLN6-1:1
5.2 lnc-CLN6-1:1