Transcript: lnc-CLN6-1:3

Basic information

LNCipedia transcript ID: lnc-CLN6-1:3 
LNCipedia gene ID: lnc-CLN6-1
Ensembl Gene ID: ENSG00000260657
Ensembl Transcript ID: ENST00000612894
Location (hg38): chr15:68267792-68268293
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 502 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000612894.1
Alternative gene names: ENSG00000260657.2; RP11-315D16.4; AC107871.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 16.8164 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLN6-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-CLN6-1:3
4.1 lnc-CLN6-1:3
5.0 lnc-CLN6-1:3
5.1 lnc-CLN6-1:3
5.2 lnc-CLN6-1:3