Transcript: lnc-CLP1-3:4

Basic information

LNCipedia transcript ID: lnc-CLP1-3:4 
LNCipedia gene ID: lnc-CLP1-3
Ensembl Gene ID: ENSG00000254602
Ensembl Transcript ID: ENST00000529908
Location (hg38): chr11:57648346-57650775
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 580 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000529908.1; AP000662.4-004; OTTHUMT00000393365.1; NONHSAT021430
Alternative gene names: ENSG00000254602.1; AP000662.4; OTTHUMG00000167137.1; AP000662.2; AP000662.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -127.0645 non-coding 
CPAT coding probability 6.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLP1-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZDHHC5-1:4
4.0 lnc-CLP1-3:4
4.1 lnc-CLP1-3:4
5.0 lnc-CLP1-3:4
5.1 lnc-GLYATL1-26:9
5.2 lnc-CLP1-3:4