Transcript: lnc-CLSTN1-2:2

Basic information

LNCipedia transcript ID: lnc-CLSTN1-2:2 
LNCipedia gene ID: lnc-CLSTN1-2
Ensembl Gene ID: ENSG00000235263
Ensembl Transcript ID: ENST00000441033
Location (hg38): chr1:9501092-9503471
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 708 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000469; ENST00000441033; ENST00000441033.1; RP13-392I16.1-001; OTTHUMT00000003726.1; NONHSAT000810
Alternative gene names: XLOC_000699; linc-GPR157-1; ENSG00000235263; RP13-392I16.1; ENSG00000235263.1; OTTHUMG00000001278.1; AL928921.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -160.1986 non-coding 
CPAT coding probability 1.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLSTN1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf200-2:1
3.1 lnc-C1orf200-2:1
4.0 lnc-C1orf200-2:1
4.1 lnc-C1orf200-2:1
5.0 lnc-C1orf200-2:1
5.1 lnc-CLSTN1-2:1
5.2 lnc-CLSTN1-2:2