Transcript: lnc-CLUAP1-1:1

Basic information

LNCipedia transcript ID: lnc-CLUAP1-1:1 
LNCipedia gene ID: lnc-CLUAP1-1
Ensembl Gene ID: ENSG00000262312
Ensembl Transcript ID: ENST00000573820
Location (hg38): chr16:3544431-3545785
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 480 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000573820.1; LA16c-390H2.4-001; OTTHUMT00000437897.1; NONHSAT148056
Alternative gene names: ENSG00000262312.1; LA16c-390H2.4; OTTHUMG00000177582.1; ENSG00000262312.2; AC004494.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -300.3717 non-coding 
CPAT coding probability 2.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CLUAP1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLUAP1-1:1
4.0 lnc-CLUAP1-1:1
4.1 lnc-CLUAP1-1:1
5.0 lnc-CLUAP1-1:1
5.1 lnc-THOC6-18:2
5.2 lnc-CLUAP1-1:1