Transcript: lnc-CMBL-1:1

Basic information

LNCipedia transcript ID: lnc-CMBL-1:1 
LNCipedia gene ID: lnc-CMBL-1
Ensembl Gene ID: ENSG00000259802
Ensembl Transcript ID: ENST00000561606
Location (hg38): chr5:10352701-10353601
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 901 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561606.1; CTD-2256P15.2-001; OTTHUMT00000429839.1
Alternative gene names: ENSG00000259802.1; CTD-2256P15.2; OTTHUMG00000175391.1; AC012640.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -83.5163 non-coding 
CPAT coding probability 3.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CMBL-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CMBL-1:1
4.0 lnc-CMBL-1:1
4.1 lnc-CMBL-1:1
5.0 lnc-CMBL-1:1
5.1 lnc-IRX2-136:9
5.2 lnc-CMBL-1:1