Transcript: lnc-CMC2-1:7

Basic information

LNCipedia transcript ID: lnc-CMC2-1:7 
LNCipedia gene ID: lnc-CMC2-1
Ensembl Gene ID: ENSG00000260213
Ensembl Transcript ID: ENST00000561808
Location (hg38): chr16:81024055-81035734
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 789 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561808.1; RP11-303E16.3-002; OTTHUMT00000432139.1; NONHSAT143929
Alternative gene names: ENSG00000260213.1; RP11-303E16.3; OTTHUMG00000176468.1; ENSG00000260213.5; AC092718.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -19.76 non-coding 
CPAT coding probability 2.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CMC2-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf61-1:2
4.0 lnc-C16orf61-1:2
4.1 lnc-C16orf61-1:2
5.0 lnc-C16orf61-1:2
5.1 lnc-MAF-17:7
5.2 lnc-CMC2-1:7