Transcript: lnc-CMC2-1:9

Basic information

LNCipedia transcript ID: lnc-CMC2-1:9 
LNCipedia gene ID: lnc-CMC2-1
Ensembl Gene ID: ENSG00000260213
Ensembl Transcript ID: ENST00000562315
Location (hg38): chr16:81016792-81024544
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 487 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562315.1; RP11-303E16.3-003; OTTHUMT00000432137.1; NONHSAT143926
Alternative gene names: ENSG00000260213.1; RP11-303E16.3; OTTHUMG00000176468.1; ENSG00000260213.5; AC092718.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.6514 non-coding 
CPAT coding probability 4.44% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CMC2-1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C16orf61-1:3
4.0 lnc-C16orf61-1:3
4.1 lnc-C16orf61-1:3
5.0 lnc-C16orf61-1:3
5.1 lnc-MAF-17:9
5.2 lnc-CMC2-1:9