Transcript: lnc-CNIH3-1:2

Basic information

LNCipedia transcript ID: lnc-CNIH3-1:2 
LNCipedia gene ID: lnc-CNIH3-1
Ensembl Gene ID: ENSG00000225334
Ensembl Transcript ID: ENST00000416908
Location (hg38): chr1:224766900-224773341
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 423 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000410; ENST00000416908.1; RP11-449J1.1-001; OTTHUMT00000092017.1
Alternative gene names: XLOC_000584; linc-DNAH14; ENSG00000225334.1; RP11-449J1.1; OTTHUMG00000037716.1; AL391811.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -192.5366 non-coding 
CPAT coding probability 3.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CNIH3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CNIH3-1:2
3.1 lnc-CNIH3-1:2
4.0 lnc-CNIH3-1:2
4.1 lnc-CNIH3-1:2
5.0 lnc-CNIH3-1:2
5.1 lnc-CAPN2-29:3
5.2 lnc-CNIH3-1:2