Transcript: lnc-CNN3-1:2

Basic information

LNCipedia transcript ID: lnc-CNN3-1:2 
LNCipedia gene ID: lnc-CNN3-1
Location (hg38): chr1:94836748-94855426
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 697 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000422162.1; RP11-465K1.2-001; OTTHUMT00000029556.1; NONHSAT004621
Alternative gene names: ENSG00000237416.2; RP11-465K1.2; OTTHUMG00000010702.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.4668 non-coding 
CPAT coding probability 1.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CNN3-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CNN3-1:2
4.0 lnc-CNN3-1:2
4.1 lnc-CNN3-1:2
5.0 lnc-CNN3-1:2
5.1 lnc-CNN3-1:2
5.2 lnc-CNN3-1:2