Transcript: lnc-CNST-1:2

Basic information

LNCipedia transcript ID: lnc-CNST-1:2 
LNCipedia gene ID: lnc-CNST-1
Location (hg38): chr1:246683151-246691873
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 924 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00001350; NONHSAT010717
Alternative gene names: XLOC_000642; linc-SCCPDH


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.8571 non-coding 
CPAT coding probability 1.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CNST-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CNST-1:1
3.1 lnc-CNST-1:2
4.0 lnc-CNST-1:2
4.1 lnc-CNST-1:2
5.0 lnc-CNST-1:2
5.1 lnc-OR2G3-15:2
5.2 lnc-CNST-1:2