Transcript: lnc-CNTLN-1:1

Basic information

LNCipedia transcript ID: lnc-CNTLN-1:1 
LNCipedia gene ID: lnc-CNTLN-1
Location (hg38): chr9:17048919-17112815
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 666 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000430545.1; RP11-132E11.2-001; OTTHUMT00000051787.1; NONHSAT130297
Alternative gene names: ENSG00000237153.1; RP11-132E11.2; OTTHUMG00000019594.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -16.6971 non-coding 
CPAT coding probability 3.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CNTLN-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CNTLN-1:1
4.0 lnc-CNTLN-1:1
4.1 lnc-CNTLN-1:1
5.0 lnc-CNTLN-1:1
5.1 lnc-RECK-178:7
5.2 lnc-CNTLN-1:1