Transcript: lnc-CNTN6-2:1

Basic information

LNCipedia transcript ID: lnc-CNTN6-2:1 
LNCipedia gene ID: lnc-CNTN6-2
Ensembl Gene ID: ENSG00000224239
Ensembl Transcript ID: ENST00000423193
Location (hg38): chr3:857124-858091
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 497 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005487; ENST00000423193; ENST00000423193.1; AC090044.2-001; OTTHUMT00000337494.1
Alternative gene names: XLOC_002565; linc-CNTN6-2; ENSG00000224239; AC090044.2; ENSG00000224239.1; OTTHUMG00000154884.1; AC090044.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -5.55 non-coding 
CPAT coding probability 10.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CNTN6-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CNTN6-2:1
3.1 lnc-CNTN6-2:1
4.0 lnc-CNTN6-2:1
4.1 lnc-CNTN6-2:1
5.0 lnc-CNTN6-2:1
5.1 lnc-CAV3-51:1
5.2 lnc-CNTN6-2:1