Transcript: lnc-CNTNAP3-24:5

Basic information

LNCipedia transcript ID: lnc-CNTNAP3-24:5 
LNCipedia gene ID: lnc-CNTNAP3-24
Location (hg38): chr9:39816597-39874562
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1890 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000454645; ENST00000454645.1; RP11-204M4.2-001; OTTHUMT00000143738.1
Alternative gene names: ENSG00000204837; RP11-204M4.2; ENSG00000204837.2; OTTHUMG00000067165.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 112.9483 coding 
CPAT coding probability 43.84% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CNTNAP3-24:5 no no no no

Available literature

  1. Shen (2014), Long non-coding RNA profiling in laryngeal squamous cell carcinoma and its clinical significance: potential biomarkers for LSCC., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM75A4-3:1
3.1 lnc-FAM75A4-3:1
4.0 lnc-FAM75A4-3:1
4.1 lnc-FAM75A4-3:1
5.0 lnc-FAM75A4-3:1
5.1 lnc-SHB-24:5
5.2 lnc-CNTNAP3-24:5