Transcript: lnc-CNTNAP3-2:1

Basic information

LNCipedia transcript ID: lnc-CNTNAP3-2:1 
LNCipedia gene ID: lnc-CNTNAP3-2
Ensembl Gene ID: ENSG00000224038
Ensembl Transcript ID: ENST00000427327
Location (hg38): chr9:39384506-39405305
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 476 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427327; ENST00000427327.1; RP11-347J14.8-001; OTTHUMT00000143659.1; NONHSAT131215
Alternative gene names: ENSG00000224038; RP11-347J14.8; ENSG00000224038.1; OTTHUMG00000067122.1; BX005214.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.4881 non-coding 
CPAT coding probability 2.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CNTNAP3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CNTNAP3-2:1
3.1 lnc-CNTNAP3-2:1
4.0 lnc-CNTNAP3-2:1
4.1 lnc-CNTNAP3-2:1
5.0 lnc-CNTNAP3-2:1
5.1 lnc-SHB-19:1
5.2 lnc-CNTNAP3-2:1