Transcript: lnc-CNTNAP3B-2:2

Basic information

LNCipedia transcript ID: lnc-CNTNAP3B-2:2 
LNCipedia gene ID: lnc-CNTNAP3B-2
Ensembl Gene ID: ENSG00000237357
Ensembl Transcript ID: ENST00000435586
Location (hg38): chr9:42566679-42569353
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2579 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435586; ENST00000435586.1; RP11-475I24.3-001; OTTHUMT00000036994.1; NONHSAT131386
Alternative gene names: ENSG00000237357; RP11-475I24.3; ENSG00000237357.1; OTTHUMG00000013230.1; ENSG00000237357.2; BX088651.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 85.9699 coding 
CPAT coding probability 15.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CNTNAP3B-2:2 no no no no

Available literature

  1. Ruan (2015), Long non-coding RNA expression profile in atrial fibrillation., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-160N1.10.1-2:1
3.1 lnc-RP11-160N1.10.1-2:1
4.0 lnc-RP11-160N1.10.1-2:1
4.1 lnc-RP11-160N1.10.1-2:1
5.0 lnc-RP11-160N1.10.1-2:1
5.1 lnc-SHB-48:1
5.2 lnc-CNTNAP3B-2:2