Transcript: lnc-CNTNAP3B-2:3

Basic information

LNCipedia transcript ID: lnc-CNTNAP3B-2:3 
LNCipedia gene ID: lnc-CNTNAP3B-2
RefSeq ID: NR_126050
Location (hg38): chr9:42567859-42569349
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 522 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_126050; NR_126050.1
Alternative gene names: LOC103908605


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 62.7301 coding 
CPAT coding probability 17.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-CNTNAP3B-2:3 no no no no

Available literature

  1. Ruan (2015), Long non-coding RNA expression profile in atrial fibrillation., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-160N1.10.1-2:5
4.0 lnc-RP11-160N1.10.1-2:5
4.1 lnc-RP11-160N1.10.1-2:5
5.0 lnc-RP11-160N1.10.1-2:5
5.1 lnc-SHB-48:2
5.2 lnc-CNTNAP3B-2:3