Transcript: lnc-CNTNAP3B-2:5

Basic information

LNCipedia transcript ID: lnc-CNTNAP3B-2:5 
LNCipedia gene ID: lnc-CNTNAP3B-2
Location (hg38): chr9:42567859-42568659
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 257 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000425309; ENST00000425309.1; RP11-475I24.3-003; OTTHUMT00000036996.1; NONHSAT131389
Alternative gene names: ENSG00000237357; RP11-475I24.3; ENSG00000237357.1; OTTHUMG00000013230.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.7249 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CNTNAP3B-2:5 no no no no

Available literature

  1. Ruan (2015), Long non-coding RNA expression profile in atrial fibrillation., Int J Clin Exp Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP11-160N1.10.1-2:3
3.1 lnc-RP11-160N1.10.1-2:3
4.0 lnc-RP11-160N1.10.1-2:3
4.1 lnc-RP11-160N1.10.1-2:3
5.0 lnc-RP11-160N1.10.1-2:3
5.1 lnc-SHB-48:4
5.2 lnc-CNTNAP3B-2:5