Transcript: lnc-COA6-6:1

Basic information

LNCipedia transcript ID: lnc-COA6-6:1 
LNCipedia gene ID: lnc-COA6-6
Ensembl Gene ID: ENSG00000228044
Ensembl Transcript ID: ENST00000417805
RefSeq ID: NR_125944
Location (hg38): chr1:234646289-234660924
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1373 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000417805; ENST00000417805.1; RP4-781K5.4-001; OTTHUMT00000092701.1; NONHSAT010295; NR_125944; NR_125944.1
Alternative gene names: ENSG00000228044; RP4-781K5.4; ENSG00000228044.2; OTTHUMG00000037980.1; AL160408.1; LOC101927787


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.9508 non-coding 
CPAT coding probability 3.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COA6-6:1 no no no no

Available literature

  1. Idogawa (2014), Identification and analysis of large intergenic non-coding RNAs regulated by p53 family members through a genome-wide analysis of p53-binding sites., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf31-3:1
3.1 lnc-C1orf31-6:1
4.0 lnc-C1orf31-6:1
4.1 lnc-C1orf31-6:1
5.0 lnc-C1orf31-6:1
5.1 lnc-KCNK1-25:1
5.2 lnc-COA6-6:1