Transcript: lnc-COA6-6:2

Basic information

LNCipedia transcript ID: lnc-COA6-6:2 
LNCipedia gene ID: lnc-COA6-6
Location (hg38): chr1:234646289-234660923
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1372 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00000069
Alternative gene names: XLOC_000624; linc-GGPS1-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.9508 non-coding 
CPAT coding probability 3.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COA6-6:2 no no no no

Available literature

  1. Idogawa (2014), Identification and analysis of large intergenic non-coding RNAs regulated by p53 family members through a genome-wide analysis of p53-binding sites., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C1orf31-3:2
3.1 lnc-C1orf31-6:2
4.0 lnc-C1orf31-6:2
4.1 lnc-C1orf31-6:2
5.0 lnc-C1orf31-6:2
5.1 lnc-KCNK1-25:2
5.2 lnc-COA6-6:2