Transcript: lnc-COA6-6:3

Basic information

LNCipedia transcript ID: lnc-COA6-6:3 
LNCipedia gene ID: lnc-COA6-6
Location (hg38): chr1:234656101-234660305
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1262 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT010296
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.0845 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COA6-6:3 no no no no

Available literature

  1. Idogawa (2014), Identification and analysis of large intergenic non-coding RNAs regulated by p53 family members through a genome-wide analysis of p53-binding sites., Hum. Mol. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf31-6:6
4.0 lnc-C1orf31-6:6
4.1 lnc-C1orf31-6:6
5.0 lnc-C1orf31-6:6
5.1 lnc-KCNK1-25:3
5.2 lnc-COA6-6:3