Transcript: lnc-COG5-3:1

Basic information

LNCipedia transcript ID: lnc-COG5-3:1 
LNCipedia gene ID: lnc-COG5-3
Ensembl Gene ID: ENSG00000272072
Ensembl Transcript ID: ENST00000607036
Location (hg38): chr7:107192559-107193300
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 742 bp
Exons: 1
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000607036.1
Alternative gene names: ENSG00000272072.1; CTA-363E19.2; AC004492.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -68.0447 non-coding 
CPAT coding probability 2.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COG5-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COG5-3:1
4.0 lnc-COG5-3:1
4.1 lnc-COG5-3:1
5.0 lnc-COG5-3:1
5.1 lnc-NRCAM-18:1
5.2 lnc-COG5-3:1