Transcript: lnc-COIL-2:3

Basic information

LNCipedia transcript ID: lnc-COIL-2:3 
LNCipedia gene ID: lnc-COIL-2
Ensembl Gene ID: ENSG00000263004
Ensembl Transcript ID: ENST00000576871
Location (hg38): chr17:57078298-57085022
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 713 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000576871.1; RP11-166P13.3-002; OTTHUMT00000440638.1
Alternative gene names: ENSG00000263004.1; RP11-166P13.3; OTTHUMG00000178131.1; AC007114.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.3905 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COIL-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COIL-2:3
4.0 lnc-COIL-2:3
4.1 lnc-COIL-2:3
5.0 lnc-COIL-2:3
5.1 lnc-PTRH2-46:5
5.2 lnc-COIL-2:3