Transcript: lnc-COIL-2:7

Basic information

LNCipedia transcript ID: lnc-COIL-2:7 
LNCipedia gene ID: lnc-COIL-2
Location (hg38): chr17:57071522-57079622
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1313 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025702; NONHSAT054878
Alternative gene names: XLOC_012530; linc-COIL-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
CEKLGDNIEK 92.3076923076923% sense-2
Lee translation initiation sites 0 non-coding 
PhyloCSF score -90.396 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-COIL-2:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COIL-2:5
3.1 lnc-COIL-2:7
4.0 lnc-COIL-2:7
4.1 lnc-COIL-2:7
5.0 lnc-COIL-2:7
5.1 lnc-PTRH2-46:15
5.2 lnc-COIL-2:7