Transcript: lnc-COIL-3:1

Basic information

LNCipedia transcript ID: lnc-COIL-3:1 
LNCipedia gene ID: lnc-COIL-3
Ensembl Gene ID: ENSG00000263089
Ensembl Transcript ID: ENST00000576014
Location (hg38): chr17:57092145-57096425
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4281 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000576014.1; RP11-166P13.4-001; OTTHUMT00000440656.1
Alternative gene names: ENSG00000263089.1; RP11-166P13.4; OTTHUMG00000178132.1; AC007114.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.404 non-coding 
CPAT coding probability 16.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COIL-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COIL-3:1
4.0 lnc-COIL-3:1
4.1 lnc-COIL-3:1
5.0 lnc-COIL-3:1
5.1 lnc-PTRH2-45:2
5.2 lnc-COIL-3:1