Transcript: lnc-COL18A1-3:1

Basic information

LNCipedia transcript ID: lnc-COL18A1-3:1 
LNCipedia gene ID: lnc-COL18A1-3
Ensembl Gene ID: ENSG00000229382
Ensembl Transcript ID: ENST00000445242
Location (hg38): chr21:45336707-45338665
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 379 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028860; ENST00000445242; ENST00000445242.1; BX322557.13-001; OTTHUMT00000206822.1; NONHSAT082951
Alternative gene names: XLOC_013982; linc-COL18A1-3; ENSG00000229382; BX322557.13; ENSG00000229382.1; OTTHUMG00000090402.1; BX322557.2; BX322557.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -86.954 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL18A1-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL18A1-3:1
3.1 lnc-COL18A1-3:1
4.0 lnc-COL18A1-3:1
4.1 lnc-COL18A1-3:1
5.0 lnc-COL18A1-3:1
5.1 lnc-PRMT2-33:1
5.2 lnc-COL18A1-3:1