Transcript: lnc-COL20A1-2:1

Basic information

LNCipedia transcript ID: lnc-COL20A1-2:1 
LNCipedia gene ID: lnc-COL20A1-2
Location (hg38): chr20:63392570-63394989
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2170 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000505424; TCONS_00027982; NONHSAT080869
Alternative gene names: ENSG00000250203; XLOC_013611; linc-PPDPF-4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 44.5355 non-coding 
CPAT coding probability 65.16% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-COL20A1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL20A1-2:1
3.1 lnc-COL20A1-2:1
4.0 lnc-COL20A1-2:1
4.1 lnc-COL20A1-2:1
5.0 lnc-COL20A1-2:1
5.1 lnc-GNAS-66:1
5.2 lnc-COL20A1-2:1