Transcript: lnc-COL28A1-1:8

Basic information

LNCipedia transcript ID: lnc-COL28A1-1:8 
LNCipedia gene ID: lnc-COL28A1-1
Ensembl Gene ID: ENSG00000272894
Ensembl Transcript ID: ENST00000609497
Location (hg38): chr7:7552462-7566996
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1578 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609497.1; ENST00000609497.5
Alternative gene names: ENSG00000272894.1; RP5-1159O4.1; ENSG00000272894.5; AC004982.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 35.3336 non-coding 
CPAT coding probability 22.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL28A1-1:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COL28A1-1:8
4.0 lnc-COL28A1-1:8
4.1 lnc-COL28A1-1:8
5.0 lnc-COL28A1-1:8
5.1 lnc-RNF216-33:4
5.2 lnc-COL28A1-1:8