Transcript: lnc-COL5A1-2:1

Basic information

LNCipedia transcript ID: lnc-COL5A1-2:1 
LNCipedia gene ID: lnc-COL5A1-2
Location (hg38): chr9:134582479-134585190
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2398 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015771; ENST00000423455; ENST00000423455.1; RP11-54A22.1-001; OTTHUMT00000054951.1; NONHSAT135400
Alternative gene names: XLOC_007601; linc-COL5A1-2; ENSG00000234960; RP11-54A22.1; ENSG00000234960.1; OTTHUMG00000020888.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.8706 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL5A1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL5A1-2:1
3.1 lnc-COL5A1-2:1
4.0 lnc-COL5A1-2:1
4.1 lnc-COL5A1-2:1
5.0 lnc-COL5A1-2:1
5.1 lnc-SURF2-25:1
5.2 lnc-COL5A1-2:1