Transcript: lnc-COL6A1-1:1

Basic information

LNCipedia transcript ID: lnc-COL6A1-1:1 
LNCipedia gene ID: lnc-COL6A1-1
Location (hg38): chr21:45972813-45974954
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1225 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029064; NONHSAT083002
Alternative gene names: XLOC_013986; linc-COL6A1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.1289 non-coding 
CPAT coding probability 38.56% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-COL6A1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL6A1-1:1
3.1 lnc-COL6A1-1:1
4.0 lnc-COL6A1-1:1
4.1 lnc-COL6A1-1:1
5.0 lnc-COL6A1-1:1
5.1 lnc-PRMT2-20:1
5.2 lnc-COL6A1-1:1