Transcript: lnc-COL6A1-1:3

Basic information

LNCipedia transcript ID: lnc-COL6A1-1:3 
LNCipedia gene ID: lnc-COL6A1-1
RefSeq ID: NR_109931
Location (hg38): chr21:45972970-45974953
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1067 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109931; NR_109931.1
Alternative gene names: LOC101928796


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.1289 non-coding 
CPAT coding probability 38.76% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-COL6A1-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COL6A1-1:3
4.0 lnc-COL6A1-1:3
4.1 lnc-COL6A1-1:3
5.0 lnc-COL6A1-1:3
5.1 lnc-PRMT2-20:3
5.2 lnc-COL6A1-1:3