Transcript: lnc-COL6A1-2:1

Basic information

LNCipedia transcript ID: lnc-COL6A1-2:1 
LNCipedia gene ID: lnc-COL6A1-2
Location (hg38): chr21:46037052-46039291
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1682 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00028776
Alternative gene names: XLOC_013987; linc-COL6A2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.5983 non-coding 
CPAT coding probability 32.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL6A1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL6A1-2:1
3.1 lnc-COL6A1-2:1
4.0 lnc-COL6A1-2:1
4.1 lnc-COL6A1-2:1
5.0 lnc-COL6A1-2:1
5.1 lnc-PRMT2-16:1
5.2 lnc-COL6A1-2:1