Transcript: lnc-COL6A1-2:2

Basic information

LNCipedia transcript ID: lnc-COL6A1-2:2 
LNCipedia gene ID: lnc-COL6A1-2
Ensembl Gene ID: ENSG00000224413
Ensembl Transcript ID: ENST00000451618
Location (hg38): chr21:46037052-46039807
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2198 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451618; ENST00000451618.1; AP001476.2-001; OTTHUMT00000206885.1; NONHSAT083009
Alternative gene names: ENSG00000224413; AP001476.2; ENSG00000224413.1; OTTHUMG00000090443.1; AP001476.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 13.5983 non-coding 
CPAT coding probability 31.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL6A1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL6A1-2:2
3.1 lnc-COL6A1-2:2
4.0 lnc-COL6A1-2:2
4.1 lnc-COL6A1-2:2
5.0 lnc-COL6A1-2:2
5.1 lnc-PRMT2-16:2
5.2 lnc-COL6A1-2:2