Transcript: lnc-COL6A1-3:11

Basic information

LNCipedia transcript ID: lnc-COL6A1-3:11 
LNCipedia gene ID: lnc-COL6A1-3
Location (hg38): chr21:46040985-46054887
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5262 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000224413.1|ENCT00000272376.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 95.6455 coding 
CPAT coding probability 54.55% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-COL6A1-3:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-COL6A1-3:11
5.0 lnc-COL6A1-3:11
5.1 lnc-PRMT2-15:2
5.2 lnc-COL6A1-3:11