Transcript: lnc-COL6A1-3:14

Basic information

LNCipedia transcript ID: lnc-COL6A1-3:14 
LNCipedia gene ID: lnc-COL6A1-3
Ensembl Gene ID: ENSG00000228235
Ensembl Transcript ID: ENST00000429512
Location (hg38): chr21:46052596-46053105
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 415 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028863; ENST00000429512; ENST00000429512.1; AP001476.4-001; OTTHUMT00000206884.1; NONHSAT083011
Alternative gene names: XLOC_013988; linc-COL6A2-2; ENSG00000228235; AP001476.4; ENSG00000228235.1; OTTHUMG00000090442.1; AP001476.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL6A1-3:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL6A2-2:1
3.1 lnc-COL6A2-3:1
4.0 lnc-COL6A2-3:1
4.1 lnc-COL6A1-3:14
5.0 lnc-COL6A1-3:14
5.1 lnc-PRMT2-15:5
5.2 lnc-COL6A1-3:14