Transcript: lnc-COL6A2-4:3

Basic information

LNCipedia transcript ID: lnc-COL6A2-4:3 
LNCipedia gene ID: lnc-COL6A2-4
Location (hg38): chr21:46184745-46188517
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 855 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000228404.1|MICT00000228262.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -24.4079 non-coding 
CPAT coding probability 2.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL6A2-4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-COL6A2-4:3
5.0 lnc-COL6A2-4:3
5.1 lnc-PRMT2-11:2
5.2 lnc-COL6A2-4:3