Transcript: lnc-COL6A3-14:14

Basic information

LNCipedia transcript ID: lnc-COL6A3-14:14 
LNCipedia gene ID: lnc-COL6A3-14
Ensembl Gene ID: ENSG00000124835
Ensembl Transcript ID: ENST00000244820
RefSeq ID: NR_135202
Location (hg38): chr2:237048599-237056167
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2231 bp
Exons: 7
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000244820.2; AC105760.3-001; OTTHUMT00000329069.1; NR_135202.1
Alternative gene names: ENSG00000124835.2; AC105760.3; OTTHUMG00000153026.1; AC105760.1; LOC93463


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -46.9611 non-coding 
CPAT coding probability 25.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL6A3-14:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COL6A3-6:1
4.0 lnc-COL6A3-6:1
4.1 lnc-COL6A3-5:14
5.0 lnc-COL6A3-5:14
5.1 lnc-ASB18-5:14
5.2 lnc-COL6A3-14:14