Transcript: lnc-COL6A3-1:2

Basic information

LNCipedia transcript ID: lnc-COL6A3-1:2 
LNCipedia gene ID: lnc-COL6A3-1
Ensembl Gene ID: ENSG00000222032
Ensembl Transcript ID: ENST00000409910
Location (hg38): chr2:237428920-237434822
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 541 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003518; ENST00000409910; ENST00000409910.1; AC112721.2-001; OTTHUMT00000328876.2; NONHSAT077643
Alternative gene names: XLOC_002531; linc-COL6A3-2; ENSG00000222032; AC112721.2; ENSG00000222032.1; OTTHUMG00000152980.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.2996 non-coding 
CPAT coding probability 6.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL6A3-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-AC112721.1.1-1:1
3.1 lnc-AC112721.1.1-1:1
4.0 lnc-AC112721.1.1-1:1
4.1 lnc-AC112721.1.1-1:1
5.0 lnc-AC112721.1.1-1:1
5.1 lnc-ASB18-19:1
5.2 lnc-COL6A3-1:2