Transcript: lnc-COL6A3-4:1

Basic information

LNCipedia transcript ID: lnc-COL6A3-4:1 
LNCipedia gene ID: lnc-COL6A3-4
Ensembl Gene ID: ENSG00000224844
Ensembl Transcript ID: ENST00000416509
Location (hg38): chr2:237122910-237124097
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 669 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003517; ENST00000416509; ENST00000416509.1; AC107079.1-001; OTTHUMT00000329029.1; NONHSAT077624
Alternative gene names: XLOC_002526; linc-IQCA1-3; ENSG00000224844; AC107079.1; ENSG00000224844.1; OTTHUMG00000153018.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -7.3823 non-coding 
CPAT coding probability 4.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL6A3-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL6A3-4:1
3.1 lnc-COL6A3-4:1
4.0 lnc-COL6A3-4:1
4.1 lnc-COL6A3-4:1
5.0 lnc-COL6A3-4:1
5.1 lnc-ASB18-7:2
5.2 lnc-COL6A3-4:1