Transcript: lnc-COL6A3-6:2

Basic information

LNCipedia transcript ID: lnc-COL6A3-6:2 
LNCipedia gene ID: lnc-COL6A3-6
Ensembl Gene ID: ENSG00000222022
Ensembl Transcript ID: ENST00000409162
Location (hg38): chr2:237421420-237425276
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 588 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000409162.1
Alternative gene names: ENSG00000222022.1; AC112721.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -261.8859 non-coding 
CPAT coding probability 26.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL6A3-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC112721.1.1-6:1
4.1 lnc-AC112721.1.1-6:1
5.0 lnc-AC112721.1.1-6:1
5.1 lnc-ASB18-18:1
5.2 lnc-COL6A3-6:2