Transcript: lnc-COL8A2-60:4

Basic information

LNCipedia transcript ID: lnc-COL8A2-60:4 
LNCipedia gene ID: lnc-COL8A2-60
Location (hg38): chr1:36155219-36155865
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 647 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000054939.1|FTMT20200001262.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -246.9352 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL8A2-60:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-TRAPPC3-1:4
5.0 lnc-TRAPPC3-1:4
5.1 lnc-COL8A2-4:4
5.2 lnc-COL8A2-60:4