Transcript: lnc-COL9A2-12:1

Basic information

LNCipedia transcript ID: lnc-COL9A2-12:1 
LNCipedia gene ID: lnc-COL9A2-12
Ensembl Gene ID: ENSG00000284677
Ensembl Transcript ID: ENST00000642138
Location (hg38): chr1:40436199-40450039
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 673 bp
Exons: 5
Sources: Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000642138.1
Alternative gene names: ENSG00000284677.1; AL031985.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -9.0632 non-coding 
CPAT coding probability 12.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL9A2-12:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-BMP8B-12:1
5.1 lnc-BMP8B-12:1
5.2 lnc-COL9A2-12:1