Transcript: lnc-COL9A2-1:1

Basic information

LNCipedia transcript ID: lnc-COL9A2-1:1 
LNCipedia gene ID: lnc-COL9A2-1
Ensembl Gene ID: ENSG00000259943
Ensembl Transcript ID: ENST00000567508
Location (hg38): chr1:40256427-40257967
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1541 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567508.1; RP1-39G22.7-001; OTTHUMT00000431110.2
Alternative gene names: ENSG00000259943.1; RP1-39G22.7; OTTHUMG00000175805.2; AL050341.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -56.2471 non-coding 
CPAT coding probability 2.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COL9A2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COL9A2-1:1
4.0 lnc-COL9A2-1:1
4.1 lnc-COL9A2-1:1
5.0 lnc-COL9A2-1:1
5.1 lnc-BMP8B-9:2
5.2 lnc-COL9A2-1:1