Transcript: lnc-COPG1-2:5

Basic information

LNCipedia transcript ID: lnc-COPG1-2:5 
LNCipedia gene ID: lnc-COPG1-2
Location (hg38): chr3:129233311-129235833
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 356 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00006223
Alternative gene names: XLOC_002813; linc-COPG-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.8537 non-coding 
CPAT coding probability 4.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COPG1-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COPG-2:2
3.1 lnc-COPG-2:2
4.0 lnc-COPG-2:2
4.1 lnc-COPG-2:2
5.0 lnc-COPG-2:2
5.1 lnc-HMCES-6:5
5.2 lnc-COPG1-2:5