Transcript: lnc-COPZ2-1:1

Basic information

LNCipedia transcript ID: lnc-COPZ2-1:1 
LNCipedia gene ID: lnc-COPZ2-1
Ensembl Gene ID: ENSG00000263412
Ensembl Transcript ID: ENST00000584428
Location (hg38): chr17:48046881-48048073
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 539 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584428.1; RP5-890E16.2-001; OTTHUMT00000443015.1; NONHSAT054370
Alternative gene names: ENSG00000263412.1; RP5-890E16.2; OTTHUMG00000178705.1; AC004477.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -175.0731 non-coding 
CPAT coding probability 16.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COPZ2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COPZ2-1:1
4.0 lnc-COPZ2-1:1
4.1 lnc-COPZ2-1:1
5.0 lnc-COPZ2-1:1
5.1 lnc-ZNF652-37:4
5.2 lnc-COPZ2-1:1