Transcript: lnc-CORO6-1:1

Basic information

LNCipedia transcript ID: lnc-CORO6-1:1 
LNCipedia gene ID: lnc-CORO6-1
Ensembl Gene ID: ENSG00000265625
Ensembl Transcript ID: ENST00000582881
Location (hg38): chr17:29644796-29645847
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1052 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000582881.1; RP11-68I3.11-001; OTTHUMT00000447863.1; NONHSAT052728
Alternative gene names: ENSG00000265625.1; RP11-68I3.11; OTTHUMG00000179736.1; AC104564.6; AC104564.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.1764 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-CORO6-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CORO6-1:1
4.0 lnc-CORO6-1:1
4.1 lnc-CORO6-1:1
5.0 lnc-CORO6-1:1
5.1 lnc-SLC6A4-22:1
5.2 lnc-CORO6-1:1