Transcript: lnc-COX10-4:1

Basic information

LNCipedia transcript ID: lnc-COX10-4:1 
LNCipedia gene ID: lnc-COX10-4
Ensembl Gene ID: ENSG00000266378
Ensembl Transcript ID: ENST00000584683
Location (hg38): chr17:14327335-14329474
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2140 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000584683.1; RP11-214O1.3-001; OTTHUMT00000447654.1; NONHSAT145767
Alternative gene names: ENSG00000266378.1; RP11-214O1.3; OTTHUMG00000179687.1; AC005224.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.0194 non-coding 
CPAT coding probability 0.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COX10-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COX10-4:1
4.0 lnc-COX10-4:1
4.1 lnc-COX10-4:1
5.0 lnc-COX10-4:1
5.1 lnc-GLP2R-40:1
5.2 lnc-COX10-4:1