Transcript: lnc-COX17-1:2

Basic information

LNCipedia transcript ID: lnc-COX17-1:2 
LNCipedia gene ID: lnc-COX17-1
Ensembl Gene ID: ENSG00000239994
Ensembl Transcript ID: ENST00000489428
Location (hg38): chr3:119744139-119750350
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 266 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT091405; ENST00000489428.2
Alternative gene names: ENSG00000239994.2; RP11-169N13.4; AC069444.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -409.8624 non-coding 
CPAT coding probability 0.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-COX17-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-COX17-1:2
4.0 lnc-COX17-1:2
4.1 lnc-COX17-1:2
5.0 lnc-COX17-1:2
5.1 lnc-GOLGB1-21:1
5.2 lnc-COX17-1:2