Transcript: lnc-COX19-2:2

Basic information

LNCipedia transcript ID: lnc-COX19-2:2 
LNCipedia gene ID: lnc-COX19-2
Ensembl Gene ID: ENSG00000257607
Ensembl Transcript ID: ENST00000549241
Location (hg38): chr7:1055360-1059261
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1562 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000500070; ENST00000549241.1; RP11-449P15.1-001; OTTHUMT00000404580.1; NONHSAT118688
Alternative gene names: ENSG00000244981; ENSG00000257607.1; RP11-449P15.1; OTTHUMG00000169520.1; AC073957.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 56.9987 non-coding 
CPAT coding probability 29.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-COX19-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COX19-2:2
3.1 lnc-COX19-2:2
4.0 lnc-COX19-2:2
4.1 lnc-COX19-2:2
5.0 lnc-COX19-2:2
5.1 lnc-PRKAR1B-12:2
5.2 lnc-COX19-2:2